Row

Average Diel Cycle Timeseries Diagnostics

Network Diagnostics QAQC Definitions

stid last data qaqc co2 err co2 ptp ch4 err ch4 ptp
dbk Aug 22 14:55 MDT 1 0.62 - -
fru Aug 13 18:10 MDT - - - -
hdp Aug 22 14:55 MDT 0.27 0.26 0.0096 0.0089
heb Aug 22 14:55 MDT -4 27 0.91 - -
hpl Aug 22 14:55 MDT 0.31 0.1 0.0067 0.0069
imc Aug 22 14:58 MDT 3.5 1.2 - -
lgn Aug 22 14:56 MDT 1.5 0.94 - -
rpk Aug 22 14:56 MDT 2.9 0.48 - -
sug Aug 22 14:57 MDT -3 - 1 - -
wbb Aug 22 14:57 MDT 0.48 0.62 0.0077 0.0026

Row

Instrument Diagnostics

CO2 Calibrations

CH4 Calibrations

Log

$asb
 [1] Run: asb/licor_6262 2019-07-11 23:45:08                                                                                   
 [2] No bad data file found for: asb/licor_6262                                                                                
 [3] Error in proc_init() : asb data already up to date.                                                                       
 [4] Error in file(filename, "r", encoding = encoding) :                                                                       
 [5]   cannot open the connection                                                                                              
 [6] Calls: source -> file                                                                                                     
 [7] In addition: Warning message:                                                                                             
 [8] In file(filename, "r", encoding = encoding) :                                                                             
 [9]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[10] Execution halted                                                                                                          
[11] Error in file(filename, "r", encoding = encoding) :                                                                       
[12]   cannot open the connection                                                                                              
[13] Calls: source -> file                                                                                                     
[14] In addition: Warning message:                                                                                             
[15] In file(filename, "r", encoding = encoding) :                                                                             
[16]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[17] Execution halted                                                                                                          

$csp
 [1] Run: csp/lgr_ugga 2019-07-11 23:45:12                                                                                     
 [2] Error in proc_init() : csp data already up to date.                                                                       
 [3] Error in file(filename, "r", encoding = encoding) :                                                                       
 [4]   cannot open the connection                                                                                              
 [5] Calls: source -> file                                                                                                     
 [6] In addition: Warning message:                                                                                             
 [7] In file(filename, "r", encoding = encoding) :                                                                             
 [8]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
 [9] Execution halted                                                                                                          
[10] Error in file(filename, "r", encoding = encoding) :                                                                       
[11]   cannot open the connection                                                                                              
[12] Calls: source -> file                                                                                                     
[13] In addition: Warning message:                                                                                             
[14] In file(filename, "r", encoding = encoding) :                                                                             
[15]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[16] Execution halted                                                                                                          

$dbk
 [1] Run: dbk/metone_es642 2019-07-11 23:45:20                                                                                 
 [2] No bad data file found for: dbk/metone_es642                                                                              
 [3] Error in cr1000_query(uri, table, last_time + 5) :                                                                        
 [4]   PM table not found at 166.130.22.212:80                                                                                 
 [5] Error in file(filename, "r", encoding = encoding) :                                                                       
 [6]   cannot open the connection                                                                                              
 [7] Calls: source -> file                                                                                                     
 [8] In addition: Warning message:                                                                                             
 [9] In file(filename, "r", encoding = encoding) :                                                                             
[10]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[11] Execution halted                                                                                                          
[12] Error in file(filename, "r", encoding = encoding) :                                                                       
[13]   cannot open the connection                                                                                              
[14] Calls: source -> file                                                                                                     
[15] In addition: Warning message:                                                                                             
[16] In file(filename, "r", encoding = encoding) :                                                                             
[17]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[18] Execution halted                                                                                                          

$fru
 [1] Run: fru/lgr_ugga 2019-07-11 23:45:25                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 9472 obs. of  23 variables:                                                        
 [4]  $ Time_UTC    : POSIXct, format: "2019-07-10 22:03:27" "2019-07-10 22:03:37" ...                                            
 [5]  $ CH4_ppm     : num  1.9 1.9 1.9 1.9 1.9 ...                                                                                
 [6]  $ CH4_ppm_sd  : num  0.000564 0.000664 0.000976 0.000805 0.000807 ...                                                       
 [7]  $ H2O_ppm     : num  8466 8707 8952 8440 8796 ...                                                                           
 [8]  $ H2O_ppm_sd  : num  38.6 162.2 72.6 113.3 187.9 ...                                                                        
 [9]  $ CO2_ppm     : num  405 404 404 405 404 ...                                                                                
[10]  $ CO2_ppm_sd  : num  0.306 0.401 0.228 0.285 0.267 ...                                                                      
[11]  $ CH4d_ppm    : num  1.92 1.92 1.92 1.92 1.92 ...                                                                           
[12]  $ CH4d_ppm_sd : num  0.000576 0.000803 0.000899 0.000694 0.000637 ...                                                       
[13]  $ CO2d_ppm    : num  408 408 408 408 408 ...                                                                                
[14]  $ CO2d_ppm_sd : num  0.32 0.354 0.222 0.288 0.245 ...                                                                       
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.0117 0.0134 0.0109 0.0145 0.0143 ...                                                                 
[17]  $ GasT_C      : num  24.4 24.4 24.4 24.4 24.4 ...                                                                           
[18]  $ GasT_C_sd   : num  0.000636 0.000639 0.00089 0.000671 0.000625 ...                                                        
[19]  $ AmbT_C      : num  26 25.9 25.9 25.9 25.9 ...                                                                             
[20]  $ AmbT_C_sd   : num  0.01045 0.01092 0.01019 0.0064 0.00225 ...                                                             
[21]  $ RD0_us      : num  9.47 9.47 9.47 9.47 9.47 ...                                                                           
[22]  $ RD0_us_sd   : num  0.001606 0.001836 0.002077 0.001742 0.000528 ...                                                       
[23]  $ RD1_us      : num  9.24 9.24 9.24 9.24 9.24 ...                                                                           
[24]  $ RD1_us_sd   : num  0.00392 0.00452 0.00221 0.00327 0.00241 ...                                                            
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Error in file(filename, "r", encoding = encoding) :                                                                          
[28]   cannot open the connection                                                                                                 
[29] Calls: source -> file                                                                                                        
[30] In addition: Warning message:                                                                                                
[31] In file(filename, "r", encoding = encoding) :                                                                                
[32]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[33] Execution halted                                                                                                             
[34] Error in file(filename, "r", encoding = encoding) :                                                                          
[35]   cannot open the connection                                                                                                 
[36] Calls: source -> file                                                                                                        
[37] In addition: Warning message:                                                                                                
[38] In file(filename, "r", encoding = encoding) :                                                                                
[39]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[40] Execution halted                                                                                                             

$hdp
 [1] Run: hdp/lgr_ugga 2019-07-11 23:45:47                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 9964 obs. of  23 variables:                                                        
 [4]  $ Time_UTC    : POSIXct, format: "2019-07-10 20:43:42" "2019-07-10 20:43:52" ...                                            
 [5]  $ CH4_ppm     : num  1.98 2 1.95 1.92 1.91 ...                                                                              
 [6]  $ CH4_ppm_sd  : num  0.01785 0.02079 0.0053 0.00917 0.00658 ...                                                             
 [7]  $ H2O_ppm     : num  2768 2762 2775 2759 2770 ...                                                                           
 [8]  $ H2O_ppm_sd  : num  57.7 40.4 53.2 50.4 28.2 ...                                                                           
 [9]  $ CO2_ppm     : num  408 408 408 408 408 ...                                                                                
[10]  $ CO2_ppm_sd  : num  0.324 0.402 0.41 0.285 0.25 ...                                                                        
[11]  $ CH4d_ppm    : num  1.98 2 1.96 1.92 1.91 ...                                                                              
[12]  $ CH4d_ppm_sd : num  0.01786 0.02084 0.00532 0.00919 0.00662 ...                                                            
[13]  $ CO2d_ppm    : num  409 409 409 409 409 ...                                                                                
[14]  $ CO2d_ppm_sd : num  0.314 0.406 0.408 0.282 0.25 ...                                                                       
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.0258 0.0122 0.0172 0.0178 0.0132 ...                                                                 
[17]  $ GasT_C      : num  34.1 34.1 34.1 34.1 34.1 ...                                                                           
[18]  $ GasT_C_sd   : num  0.001017 0.00087 0.000615 0.001062 0.000669 ...                                                        
[19]  $ AmbT_C      : num  36.5 36.5 36.5 36.5 36.5 ...                                                                           
[20]  $ AmbT_C_sd   : num  0.00187 0.00133 0.00116 0.00144 0.00188 ...                                                            
[21]  $ RD0_us      : num  10.2 10.2 10.2 10.2 10.2 ...                                                                           
[22]  $ RD0_us_sd   : num  0.00285 0.00229 0.00316 0.00308 0.00361 ...                                                            
[23]  $ RD1_us      : num  12.2 12.2 12.2 12.2 12.2 ...                                                                           
[24]  $ RD1_us_sd   : num  0.0031 0.00385 0.00493 0.00388 0.00241 ...                                                             
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Error in file(filename, "r", encoding = encoding) :                                                                          
[28]   cannot open the connection                                                                                                 
[29] Calls: source -> file                                                                                                        
[30] In addition: Warning message:                                                                                                
[31] In file(filename, "r", encoding = encoding) :                                                                                
[32]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[33] Execution halted                                                                                                             
[34] Error in file(filename, "r", encoding = encoding) :                                                                          
[35]   cannot open the connection                                                                                                 
[36] Calls: source -> file                                                                                                        
[37] In addition: Warning message:                                                                                                
[38] In file(filename, "r", encoding = encoding) :                                                                                
[39]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[40] Execution halted                                                                                                             

$heb
 [1] Run: heb/licor_6262 2019-07-11 23:46:02                                                                                          
 [2] Sending GET request to: http://166.130.69.244:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2019-07-11T23:36:15
 [3] New data:                                                                                                                        
 [4] 'data.frame': 59 obs. of  21 variables:                                                                                          
 [5]  $ TIMESTAMP              : POSIXct, format: "2019-07-11 23:36:20" "2019-07-11 23:36:30" ...                                     
 [6]  $ RECORD                 : int  4827262 4827263 4827264 4827265 4827266 4827267 4827268 4827269 4827270 4827271 ...             
 [7]  $ Year                   : int  2019 2019 2019 2019 2019 2019 2019 2019 2019 2019 ...                                           
 [8]  $ jDay                   : int  192 192 192 192 192 192 192 192 192 192 ...                                                     
 [9]  $ HH                     : int  23 23 23 23 23 23 23 23 23 23 ...                                                               
[10]  $ MM                     : int  36 36 36 36 37 37 37 37 37 37 ...                                                               
[11]  $ SS                     : int  20 30 40 50 0 10 20 30 40 50 ...                                                                
[12]  $ batt_volt_Min          : num  12.7 12.7 12.7 12.7 12.7 ...                                                                    
[13]  $ PTemp_Avg              : num  28.9 28.9 28.9 28.9 28.9 ...                                                                    
[14]  $ Room_T_Avg             : num  30.3 30.3 30.3 30.3 30.4 ...                                                                    
[15]  $ IRGA_T_Avg             : num  37.6 37.6 37.6 37.6 37.6 ...                                                                    
[16]  $ IRGA_P_Avg             : num  83.2 83.2 83.2 83.2 83.2 ...                                                                    
[17]  $ MF_Controller_mLmin_Avg: num  399 399 399 399 399 ...                                                                         
[18]  $ PressureVolt_Avg       : num  3720 3720 3720 3720 3720 ...                                                                    
[19]  $ RH_voltage_Avg         : num  1453 1452 1455 1461 1463 ...                                                                    
[20]  $ Gas_T_Avg              : num  31.4 31.4 31.4 31.4 31.4 ...                                                                    
[21]  $ rawCO2_Voltage_Avg     : num  408 408 408 408 408 ...                                                                         
[22]  $ rawCO2_Avg             : num  408 408 408 408 408 ...                                                                         
[23]  $ rawH2O_Avg             : num  9.72 9.82 9.9 10 10.02 ...                                                                      
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                     
[25]  $ Program                : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                         
[26] Error in file(filename, "r", encoding = encoding) :                                                                              
[27]   cannot open the connection                                                                                                     
[28] Calls: source -> file                                                                                                            
[29] In addition: Warning message:                                                                                                    
[30] In file(filename, "r", encoding = encoding) :                                                                                    
[31]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory       
[32] Execution halted                                                                                                                 
[33] Error in file(filename, "r", encoding = encoding) :                                                                              
[34]   cannot open the connection                                                                                                     
[35] Calls: source -> file                                                                                                            
[36] In addition: Warning message:                                                                                                    
[37] In file(filename, "r", encoding = encoding) :                                                                                    
[38]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory       
[39] Execution halted                                                                                                                 

$hpl
 [1] Run: hpl/lgr_ugga 2019-07-11 23:46:17                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 17677 obs. of  23 variables:                                                       
 [4]  $ Time_UTC    : POSIXct, format: "2019-07-09 23:48:14" "2019-07-09 23:48:24" ...                                            
 [5]  $ CH4_ppm     : num  1.92 1.92 1.92 1.92 1.92 ...                                                                           
 [6]  $ CH4_ppm_sd  : num  0.000931 0.001146 0.001029 0.001631 0.000643 ...                                                       
 [7]  $ H2O_ppm     : num  7238 7244 7268 7274 7268 ...                                                                           
 [8]  $ H2O_ppm_sd  : num  21.8 31.4 23.3 21.5 34.8 ...                                                                           
 [9]  $ CO2_ppm     : num  408 408 408 408 408 ...                                                                                
[10]  $ CO2_ppm_sd  : num  0.144 0.165 0.201 0.129 0.158 ...                                                                      
[11]  $ CH4d_ppm    : num  1.93 1.93 1.93 1.94 1.94 ...                                                                           
[12]  $ CH4d_ppm_sd : num  0.000965 0.00118 0.001044 0.001658 0.00066 ...                                                         
[13]  $ CO2d_ppm    : num  411 411 411 411 411 ...                                                                                
[14]  $ CO2d_ppm_sd : num  0.145 0.158 0.206 0.128 0.16 ...                                                                       
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.0353 0.0357 0.0332 0.038 0.0312 ...                                                                  
[17]  $ GasT_C      : num  32.9 32.9 32.9 32.9 32.9 ...                                                                           
[18]  $ GasT_C_sd   : num  0.00455 0.00347 0.00335 0.00313 0.00311 ...                                                            
[19]  $ AmbT_C      : num  35.8 35.8 35.8 35.8 35.8 ...                                                                           
[20]  $ AmbT_C_sd   : num  0.00708 0.00351 0.00186 0.00414 0.00269 ...                                                            
[21]  $ RD0_us      : num  10.3 10.3 10.3 10.3 10.3 ...                                                                           
[22]  $ RD0_us_sd   : num  0.002 0.00187 0.00204 0.00152 0.00223 ...                                                              
[23]  $ RD1_us      : num  12.1 12.1 12.1 12.1 12.1 ...                                                                           
[24]  $ RD1_us_sd   : num  0.00295 0.00385 0.00288 0.00326 0.00408 ...                                                            
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Error in file(filename, "r", encoding = encoding) :                                                                          
[28]   cannot open the connection                                                                                                 
[29] Calls: source -> file                                                                                                        
[30] In addition: Warning message:                                                                                                
[31] In file(filename, "r", encoding = encoding) :                                                                                
[32]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[33] Execution halted                                                                                                             
[34] Error in file(filename, "r", encoding = encoding) :                                                                          
[35]   cannot open the connection                                                                                                 
[36] Calls: source -> file                                                                                                        
[37] In addition: Warning message:                                                                                                
[38] In file(filename, "r", encoding = encoding) :                                                                                
[39]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[40] Execution halted                                                                                                             

$imc
 [1] Run: imc/licor_6262 2019-07-11 23:46:41                                                                                         
 [2] Sending GET request to: http://67.128.146.28:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2019-07-11T23:43:35
 [3] New data:                                                                                                                       
 [4] 'data.frame': 30 obs. of  21 variables:                                                                                         
 [5]  $ TIMESTAMP              : POSIXct, format: "2019-07-11 23:43:40" "2019-07-11 23:43:50" ...                                    
 [6]  $ RECORD                 : int  6399328 6399329 6399330 6399331 6399332 6399333 6399334 6399335 6399336 6399337 ...            
 [7]  $ Year                   : int  2019 2019 2019 2019 2019 2019 2019 2019 2019 2019 ...                                          
 [8]  $ jDay                   : int  192 192 192 192 192 192 192 192 192 192 ...                                                    
 [9]  $ HH                     : int  23 23 23 23 23 23 23 23 23 23 ...                                                              
[10]  $ MM                     : int  43 43 44 44 44 44 44 44 45 45 ...                                                              
[11]  $ SS                     : int  40 50 0 10 20 30 40 50 0 10 ...                                                                
[12]  $ batt_volt_Min          : num  12.7 12.7 12.7 12.7 12.7 ...                                                                   
[13]  $ PTemp_Avg              : num  27.2 27.2 27.2 27.2 27.2 ...                                                                   
[14]  $ Room_T_Avg             : num  27.2 27.2 27.2 27.2 27.2 ...                                                                   
[15]  $ IRGA_T_Avg             : num  34.4 34.4 34.4 34.4 34.4 ...                                                                   
[16]  $ IRGA_P_Avg             : num  85.2 85.2 85.2 85.2 85.2 ...                                                                   
[17]  $ MF_Controller_mLmin_Avg: num  400 400 400 400 400 ...                                                                        
[18]  $ PressureVolt_Avg       : num  3828 3828 3828 3828 3828 ...                                                                   
[19]  $ RH_voltage_Avg         : num  1412 1412 1413 1412 1412 ...                                                                   
[20]  $ Gas_T_Avg              : num  27.2 27.2 27.2 27.2 27.2 ...                                                                   
[21]  $ rawCO2_Voltage_Avg     : num  409 409 409 409 409 ...                                                                        
[22]  $ rawCO2_Avg             : num  409 409 409 409 409 ...                                                                        
[23]  $ rawH2O_Avg             : num  5.09 5.09 5.1 5.1 5.1 ...                                                                      
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                    
[25]  $ Program                : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                        
[26] Error in file(filename, "r", encoding = encoding) :                                                                             
[27]   cannot open the connection                                                                                                    
[28] Calls: source -> file                                                                                                           
[29] In addition: Warning message:                                                                                                   
[30] In file(filename, "r", encoding = encoding) :                                                                                   
[31]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[32] Execution halted                                                                                                                
[33] Error in file(filename, "r", encoding = encoding) :                                                                             
[34]   cannot open the connection                                                                                                    
[35] Calls: source -> file                                                                                                           
[36] In addition: Warning message:                                                                                                   
[37] In file(filename, "r", encoding = encoding) :                                                                                   
[38]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[39] Execution halted                                                                                                                

$lgn
 [1] Run: lgn/licor_6262 2019-07-11 23:46:48                                                                                         
 [2] Sending GET request to: http://129.123.46.97:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2019-07-11T23:41:45
 [3] New data:                                                                                                                       
 [4] 'data.frame': 30 obs. of  21 variables:                                                                                         
 [5]  $ TIMESTAMP              : POSIXct, format: "2019-07-11 23:41:50" "2019-07-11 23:42:00" ...                                    
 [6]  $ RECORD                 : int  1213101 1213102 1213103 1213104 1213105 1213106 1213107 1213108 1213109 1213110 ...            
 [7]  $ Year                   : int  2019 2019 2019 2019 2019 2019 2019 2019 2019 2019 ...                                          
 [8]  $ jDay                   : int  192 192 192 192 192 192 192 192 192 192 ...                                                    
 [9]  $ HH                     : int  23 23 23 23 23 23 23 23 23 23 ...                                                              
[10]  $ MM                     : int  41 42 42 42 42 42 43 43 43 43 ...                                                              
[11]  $ SS                     : int  50 0 10 20 30 50 0 10 20 30 ...                                                                
[12]  $ batt_volt_Min          : num  12.7 12.7 12.7 12.7 12.7 ...                                                                   
[13]  $ PTemp_Avg              : num  31.6 31.6 31.6 31.6 31.6 ...                                                                   
[14]  $ Room_T_Avg             : num  29.1 29.1 29.1 29.1 29.1 ...                                                                   
[15]  $ IRGA_T_Avg             : num  37.8 37.8 37.8 37.8 37.8 ...                                                                   
[16]  $ IRGA_P_Avg             : num  86.3 86.3 86.3 86.3 86.3 ...                                                                   
[17]  $ MF_Controller_mLmin_Avg: num  400 400 400 400 400 ...                                                                        
[18]  $ PressureVolt_Avg       : num  3872 3871 3871 3871 3872 ...                                                                   
[19]  $ RH_voltage_Avg         : num  1371 1366 1353 1352 1352 ...                                                                   
[20]  $ Gas_T_Avg              : num  29.2 29.2 29.2 29.2 29.2 ...                                                                   
[21]  $ rawCO2_Voltage_Avg     : num  412 412 412 412 412 ...                                                                        
[22]  $ rawCO2_Avg             : num  413 413 413 413 413 ...                                                                        
[23]  $ rawH2O_Avg             : num  7.91 7.72 7.54 7.58 7.51 ...                                                                   
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                    
[25]  $ Program                : chr  "SLCCO2_V22" "SLCCO2_V22" "SLCCO2_V22" "SLCCO2_V22" ...                                        
[26] Error in file(filename, "r", encoding = encoding) :                                                                             
[27]   cannot open the connection                                                                                                    
[28] Calls: source -> file                                                                                                           
[29] In addition: Warning message:                                                                                                   
[30] In file(filename, "r", encoding = encoding) :                                                                                   
[31]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[32] Execution halted                                                                                                                
[33] Error in file(filename, "r", encoding = encoding) :                                                                             
[34]   cannot open the connection                                                                                                    
[35] Calls: source -> file                                                                                                           
[36] In addition: Warning message:                                                                                                   
[37] In file(filename, "r", encoding = encoding) :                                                                                   
[38]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[39] Execution halted                                                                                                                

$msa
 [1] Run: msa/licor_6262 2019-07-11 23:46:55                                                                                   
 [2] No bad data file found for: msa/licor_6262                                                                                
 [3] Error in proc_init() : msa data already up to date.                                                                       
 [4] Error in file(filename, "r", encoding = encoding) :                                                                       
 [5]   cannot open the connection                                                                                              
 [6] Calls: source -> file                                                                                                     
 [7] In addition: Warning message:                                                                                             
 [8] In file(filename, "r", encoding = encoding) :                                                                             
 [9]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[10] Execution halted                                                                                                          
[11] Error in file(filename, "r", encoding = encoding) :                                                                       
[12]   cannot open the connection                                                                                              
[13] Calls: source -> file                                                                                                     
[14] In addition: Warning message:                                                                                             
[15] In file(filename, "r", encoding = encoding) :                                                                             
[16]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[17] Execution halted                                                                                                          

$mur
 [1] Run: mur/licor_6262 2019-07-11 23:46:58                                                                                   
 [2] No bad data file found for: mur/licor_6262                                                                                
 [3] Error in proc_init() : mur data already up to date.                                                                       
 [4] Error in file(filename, "r", encoding = encoding) :                                                                       
 [5]   cannot open the connection                                                                                              
 [6] Calls: source -> file                                                                                                     
 [7] In addition: Warning message:                                                                                             
 [8] In file(filename, "r", encoding = encoding) :                                                                             
 [9]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[10] Execution halted                                                                                                          
[11] Error in file(filename, "r", encoding = encoding) :                                                                       
[12]   cannot open the connection                                                                                              
[13] Calls: source -> file                                                                                                     
[14] In addition: Warning message:                                                                                             
[15] In file(filename, "r", encoding = encoding) :                                                                             
[16]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[17] Execution halted                                                                                                          

$roo
 [1] Run: roo/lgr_ugga 2019-07-11 23:47:02                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 16159 obs. of  23 variables:                                                       
 [4]  $ Time_UTC    : POSIXct, format: "2019-07-10 03:56:01" "2019-07-10 03:56:10" ...                                            
 [5]  $ CH4_ppm     : num  2.13 2.13 2.13 2.13 2.13 ...                                                                           
 [6]  $ CH4_ppm_sd  : num  0.00231 0.00103 0.0013 0.00155 0.00125 ...                                                             
 [7]  $ H2O_ppm     : num  9973 10001 9963 9900 9869 ...                                                                          
 [8]  $ H2O_ppm_sd  : num  49.5 43.6 25 45.9 28.6 ...                                                                             
 [9]  $ CO2_ppm     : num  438 439 437 434 431 ...                                                                                
[10]  $ CO2_ppm_sd  : num  2.424 0.569 1.197 0.765 0.642 ...                                                                      
[11]  $ CH4d_ppm    : num  2.15 2.15 2.15 2.15 2.15 ...                                                                           
[12]  $ CH4d_ppm_sd : num  0.00234 0.00107 0.00133 0.00157 0.00126 ...                                                            
[13]  $ CO2d_ppm    : num  442 444 441 438 436 ...                                                                                
[14]  $ CO2d_ppm_sd : num  2.464 0.59 1.21 0.783 0.655 ...                                                                        
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.1375 0.0231 0.0295 0.0178 0.0318 ...                                                                 
[17]  $ GasT_C      : num  32.1 32.1 32.1 32.1 32.1 ...                                                                           
[18]  $ GasT_C_sd   : num  0.001296 0.000839 0.000977 0.000726 0.001077 ...                                                       
[19]  $ AmbT_C      : num  34.6 34.5 34.5 34.5 34.5 ...                                                                           
[20]  $ AmbT_C_sd   : num  0.00888 0.0083 0.00463 0.00544 0.00488 ...                                                             
[21]  $ RD0_us      : num  9.56 9.56 9.56 9.56 9.56 ...                                                                           
[22]  $ RD0_us_sd   : num  0.00231 0.00287 0.00339 0.00335 0.00343 ...                                                            
[23]  $ RD1_us      : num  11.2 11.2 11.2 11.2 11.2 ...                                                                           
[24]  $ RD1_us_sd   : num  0.00457 0.00501 0.0044 0.00337 0.00349 ...                                                             
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Error in file(filename, "r", encoding = encoding) :                                                                          
[28]   cannot open the connection                                                                                                 
[29] Calls: source -> file                                                                                                        
[30] In addition: Warning message:                                                                                                
[31] In file(filename, "r", encoding = encoding) :                                                                                
[32]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[33] Execution halted                                                                                                             
[34] Error in file(filename, "r", encoding = encoding) :                                                                          
[35]   cannot open the connection                                                                                                 
[36] Calls: source -> file                                                                                                        
[37] In addition: Warning message:                                                                                                
[38] In file(filename, "r", encoding = encoding) :                                                                                
[39]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory   
[40] Execution halted                                                                                                             

$rpk
 [1] Run: rpk/licor_6262 2019-07-11 23:47:22                                                                                          
 [2] Sending GET request to: http://205.127.188.48:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2019-07-11T23:42:15
 [3] New data:                                                                                                                        
 [4] 'data.frame': 30 obs. of  21 variables:                                                                                          
 [5]  $ TIMESTAMP              : POSIXct, format: "2019-07-11 23:42:20" "2019-07-11 23:42:30" ...                                     
 [6]  $ RECORD                 : int  6398875 6398876 6398877 6398878 6398879 6398880 6398881 6398882 6398883 6398884 ...             
 [7]  $ Year                   : int  2019 2019 2019 2019 2019 2019 2019 2019 2019 2019 ...                                           
 [8]  $ jDay                   : int  192 192 192 192 192 192 192 192 192 192 ...                                                     
 [9]  $ HH                     : int  23 23 23 23 23 23 23 23 23 23 ...                                                               
[10]  $ MM                     : int  42 42 42 42 43 43 43 43 43 43 ...                                                               
[11]  $ SS                     : int  20 30 40 50 0 10 20 30 40 50 ...                                                                
[12]  $ batt_volt_Min          : num  13.2 13.2 13.2 13.2 13.2 ...                                                                    
[13]  $ PTemp_Avg              : num  29.6 29.6 29.6 29.6 29.6 ...                                                                    
[14]  $ Room_T_Avg             : num  28.2 28.1 28.1 28.1 28.2 ...                                                                    
[15]  $ IRGA_T_Avg             : num  25.7 25.7 25.7 25.7 25.7 ...                                                                    
[16]  $ IRGA_P_Avg             : num  80.5 80.5 80.5 80.5 80.5 80.5 80.5 80.5 80.5 80.5 ...                                           
[17]  $ MF_Controller_mLmin_Avg: num  401 401 401 401 401 ...                                                                         
[18]  $ PressureVolt_Avg       : num  3853 3853 3853 3853 3853 ...                                                                    
[19]  $ RH_voltage_Avg         : num  1442 1441 1441 1435 1430 ...                                                                    
[20]  $ Gas_T_Avg              : num  29.6 29.6 29.6 29.6 29.6 ...                                                                    
[21]  $ rawCO2_Voltage_Avg     : num  431 431 431 430 431 ...                                                                         
[22]  $ rawCO2_Avg             : num  429 430 429 429 429 ...                                                                         
[23]  $ rawH2O_Avg             : num  8.27 8.28 8.23 8.08 7.98 ...                                                                    
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                     
[25]  $ Program                : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                         
[26] Error in file(filename, "r", encoding = encoding) :                                                                              
[27]   cannot open the connection                                                                                                     
[28] Calls: source -> file                                                                                                            
[29] In addition: Warning message:                                                                                                    
[30] In file(filename, "r", encoding = encoding) :                                                                                    
[31]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory       
[32] Execution halted                                                                                                                 
[33] Error in file(filename, "r", encoding = encoding) :                                                                              
[34]   cannot open the connection                                                                                                     
[35] Calls: source -> file                                                                                                            
[36] In addition: Warning message:                                                                                                    
[37] In file(filename, "r", encoding = encoding) :                                                                                    
[38]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory       
[39] Execution halted                                                                                                                 

$sug
 [1] Run: sug/metone_es642 2019-07-11 23:47:33                                                                                       
 [2] No bad data file found for: sug/metone_es642                                                                                    
 [3] Sending GET request to: http://166.130.89.167:80/?command=dataquery&uri=dl:PM&format=TOA5&mode=since-time&p1=2019-07-11T23:42:45
 [4] New data:                                                                                                                       
 [5] 'data.frame': 30 obs. of  10 variables:                                                                                         
 [6]  $ TIMESTAMP    : POSIXct, format: "2019-07-11 23:42:50" "2019-07-11 23:43:00" ...                                              
 [7]  $ RECORD       : int  6399110 6399111 6399112 6399113 6399114 6399115 6399116 6399117 6399118 6399119 ...                      
 [8]  $ batt_volt_Min: num  13.2 13.2 13.2 13.2 13.2 ...                                                                             
 [9]  $ PTemp_Avg    : num  29.7 29.7 29.7 29.7 29.7 ...                                                                             
[10]  $ PM_25_Avg    : num  1.2 1.4 1.56 1.26 2.64 ...                                                                               
[11]  $ Flow_Avg     : num  1.99 2 2 2 2 ...                                                                                         
[12]  $ Temp_Avg     : num  45.1 45.1 45.1 45.3 45.2 ...                                                                             
[13]  $ RH_Avg       : num  5.19 5.26 5.21 5.15 5.15 ...                                                                             
[14]  $ BP_Avg       : num  869 869 869 869 869 ...                                                                                  
[15]  $ Program      : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                                  
[16] Error in file(filename, "r", encoding = encoding) :                                                                             
[17]   cannot open the connection                                                                                                    
[18] Calls: source -> file                                                                                                           
[19] In addition: Warning message:                                                                                                   
[20] In file(filename, "r", encoding = encoding) :                                                                                   
[21]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[22] Execution halted                                                                                                                
[23] Error in file(filename, "r", encoding = encoding) :                                                                             
[24]   cannot open the connection                                                                                                    
[25] Calls: source -> file                                                                                                           
[26] In addition: Warning message:                                                                                                   
[27] In file(filename, "r", encoding = encoding) :                                                                                   
[28]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory      
[29] Execution halted                                                                                                                

$sun
 [1] Run: sun/licor_6262 2019-07-11 23:47:40                                                                                           
 [2] Sending GET request to: http://166.130.104.236:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2019-07-11T23:43:15
 [3] New data:                                                                                                                         
 [4] 'data.frame': 30 obs. of  21 variables:                                                                                           
 [5]  $ TIMESTAMP              : POSIXct, format: "2019-07-11 23:43:20" "2019-07-11 23:43:30" ...                                      
 [6]  $ RECORD                 : int  2078703 2078704 2078705 2078706 2078707 2078708 2078709 2078710 2078711 2078712 ...              
 [7]  $ Year                   : int  2019 2019 2019 2019 2019 2019 2019 2019 2019 2019 ...                                            
 [8]  $ jDay                   : int  192 192 192 192 192 192 192 192 192 192 ...                                                      
 [9]  $ HH                     : int  23 23 23 23 23 23 23 23 23 23 ...                                                                
[10]  $ MM                     : int  43 43 43 43 44 44 44 44 44 44 ...                                                                
[11]  $ SS                     : int  20 30 40 50 0 10 20 30 40 50 ...                                                                 
[12]  $ batt_volt_Min          : num  12.6 12.6 12.6 12.6 12.6 ...                                                                     
[13]  $ PTemp_Avg              : num  28.3 28.3 28.3 28.3 28.3 ...                                                                     
[14]  $ Room_T_Avg             : num  25.9 25.9 25.8 25.7 25.7 ...                                                                     
[15]  $ IRGA_T_Avg             : num  38.7 38.7 38.7 38.7 38.7 ...                                                                     
[16]  $ IRGA_P_Avg             : num  98.7 98.7 98.7 98.7 98.7 ...                                                                     
[17]  $ MF_Controller_mLmin_Avg: num  400 400 400 400 400 ...                                                                          
[18]  $ PressureVolt_Avg       : num  3655 3655 3655 3655 3655 ...                                                                     
[19]  $ RH_voltage_Avg         : num  1574 1575 1577 1580 1582 ...                                                                     
[20]  $ Gas_T_Avg              : num  32.7 32.7 32.6 32.6 32.6 ...                                                                     
[21]  $ rawCO2_Voltage_Avg     : num  414 415 416 417 416 ...                                                                          
[22]  $ rawCO2_Avg             : num  414 415 416 416 416 ...                                                                          
[23]  $ rawH2O_Avg             : num  4.94 4.95 4.97 5.01 5.01 ...                                                                     
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                      
[25]  $ Program                : chr  "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...                                          
[26] Error in file(filename, "r", encoding = encoding) :                                                                               
[27]   cannot open the connection                                                                                                      
[28] Calls: source -> file                                                                                                             
[29] In addition: Warning message:                                                                                                     
[30] In file(filename, "r", encoding = encoding) :                                                                                     
[31]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory        
[32] Execution halted                                                                                                                  
[33] Error in file(filename, "r", encoding = encoding) :                                                                               
[34]   cannot open the connection                                                                                                      
[35] Calls: source -> file                                                                                                             
[36] In addition: Warning message:                                                                                                     
[37] In file(filename, "r", encoding = encoding) :                                                                                     
[38]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory        
[39] Execution halted                                                                                                                  

$trx01
 [1] Run: trx01/2bo3 2019-07-11 23:48:19                                                                                       
 [2] No bad data file found for: trx01/2bo3                                                                                    
 [3] Error in try({ : 2b data up to date - nothing to be done.                                                                 
 [4] Error in file(filename, "r", encoding = encoding) :                                                                       
 [5]   cannot open the connection                                                                                              
 [6] Calls: source -> file                                                                                                     
 [7] In addition: Warning message:                                                                                             
 [8] In file(filename, "r", encoding = encoding) :                                                                             
 [9]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[10] Execution halted                                                                                                          
[11] Error in file(filename, "r", encoding = encoding) :                                                                       
[12]   cannot open the connection                                                                                              
[13] Calls: source -> file                                                                                                     
[14] In addition: Warning message:                                                                                             
[15] In file(filename, "r", encoding = encoding) :                                                                             
[16]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[17] Execution halted                                                                                                          

$trx02
[1] Error in .libPaths(c("/uufs/chpc.utah.edu/common/home/u0791983/.Rpackages"),  : 
[2]   unused argument ("/uufs/chpc.utah.edu/sys/installdir/RLibs/3.5.2i")           
[3] Execution halted                                                                

$wbb
 [1] Run: wbb/teom_1400ab 2019-07-11 23:48:38                                                                                  
 [2] No bad data file found for: wbb/teom_1400ab                                                                               
 [3] Reprocessing data archive for: wbb/teom_1400ab                                                                            
 [4] rm: cannot remove ‘data/wbb/teom_1400ab/qaqc’: No such file or directory                                                  
 [5] rm: cannot remove ‘data/wbb/teom_1400ab/calibrated’: No such file or directory                                            
 [6] Error in file(filename, "r", encoding = encoding) :                                                                       
 [7]   cannot open the connection                                                                                              
 [8] Calls: source -> file                                                                                                     
 [9] In addition: Warning message:                                                                                             
[10] In file(filename, "r", encoding = encoding) :                                                                             
[11]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[12] Execution halted                                                                                                          
[13] Error in file(filename, "r", encoding = encoding) :                                                                       
[14]   cannot open the connection                                                                                              
[15] Calls: source -> file                                                                                                     
[16] In addition: Warning message:                                                                                             
[17] In file(filename, "r", encoding = encoding) :                                                                             
[18]   cannot open file '/uufs/chpc.utah.edu/common/home/lin-group2/measurements/pipeline/_global.r': No such file or directory
[19] Execution halted