Row

Average Diel Cycle Timeseries Diagnostics

Network Diagnostics QAQC Definitions

stid last data qaqc co2 err co2 ptp ch4 err ch4 ptp
dbk Apr 09 11:06 MDT 16 0.52 - -
fru Apr 09 04:55 MDT 0.74 0.31 0.016 0.00061
hdp Apr 09 11:05 MDT 0.24 0.18 0.0083 0.38
heb Apr 09 11:06 MDT 0.14 0.75 - -
hpl Apr 09 11:05 MDT 0.26 0.091 0.0085 0.0095
imc Apr 09 11:08 MDT -4 20 1 - -
lg2 Apr 09 11:07 MDT -3 - 0.93 - -
sug Apr 09 11:07 MDT -3 - 0.74 - -
wbb Apr 09 11:06 MDT 0.79 0.29 0.0083 0.0087

Row

Instrument Diagnostics

CO2 Calibrations

CH4 Calibrations

Log

$asb
[1] Run: asb/licor_6262 2020-04-09 17:05:05            
[2] No bad data file found for: asb/licor_6262         
[3] Error in proc_init() : asb data already up to date.

$csp
 [1] Run: csp/lgr_ugga 2020-04-09 17:05:08                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 11585 obs. of  23 variables:                                                       
 [4]  $ Time_UTC    : POSIXct, format: "2020-03-27 17:56:17" "2020-03-27 17:56:26" ...                                            
 [5]  $ CH4_ppm     : num  2.1 2.1 2.1 2.1 2.1 ...                                                                                
 [6]  $ CH4_ppm_sd  : num  0.001528 0.001073 0.000804 0.001626 0.002293 ...                                                       
 [7]  $ H2O_ppm     : num  6340 6315 6279 6329 6353 ...                                                                           
 [8]  $ H2O_ppm_sd  : num  29.7 36.2 72.7 47 24.7 ...                                                                             
 [9]  $ CO2_ppm     : num  417 417 417 417 417 ...                                                                                
[10]  $ CO2_ppm_sd  : num  0.132 0.196 0.176 0.254 0.195 ...                                                                      
[11]  $ CH4d_ppm    : num  2.12 2.12 2.12 2.11 2.11 ...                                                                           
[12]  $ CH4d_ppm_sd : num  0.001537 0.001084 0.000845 0.001559 0.00232 ...                                                        
[13]  $ CO2d_ppm    : num  419 419 419 419 419 ...                                                                                
[14]  $ CO2d_ppm_sd : num  0.134 0.193 0.185 0.267 0.193 ...                                                                      
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.0313 0.0291 0.0298 0.0307 0.0298 ...                                                                 
[17]  $ GasT_C      : num  20.4 20.4 20.4 20.4 20.4 ...                                                                           
[18]  $ GasT_C_sd   : num  0.00272 0.00247 0.00228 0.00221 0.00237 ...                                                            
[19]  $ AmbT_C      : num  23.3 23.4 23.4 23.4 23.4 ...                                                                           
[20]  $ AmbT_C_sd   : num  0.00683 0.00954 0.00785 0.00621 0.00488 ...                                                            
[21]  $ RD0_us      : num  11 11 11 11 11 ...                                                                                     
[22]  $ RD0_us_sd   : num  0.00167 0.0015 0.00202 0.00189 0.00244 ...                                                             
[23]  $ RD1_us      : num  11.8 11.8 11.8 11.8 11.8 ...                                                                           
[24]  $ RD1_us_sd   : num  0.00283 0.00356 0.00161 0.00417 0.00275 ...                                                            
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Warning message:                                                                                                             
[28] package ‘bindrcpp’ was built under R version 3.5.2                                                                           

$dbk
 [1] Run: dbk/metone_es642 2020-04-09 17:05:22                                                                                       
 [2] No bad data file found for: dbk/metone_es642                                                                                    
 [3] Sending GET request to: http://166.130.22.212:80/?command=dataquery&uri=dl:PM&format=TOA5&mode=since-time&p1=2020-04-09T17:01:05
 [4] New data:                                                                                                                       
 [5] 'data.frame': 31 obs. of  10 variables:                                                                                         
 [6]  $ TIMESTAMP    : POSIXct, format: "2020-04-09 17:01:10" "2020-04-09 17:01:20" ...                                              
 [7]  $ RECORD       : int  1454757 1454758 1454759 1454760 1454761 1454762 1454763 1454764 1454765 1454766 ...                      
 [8]  $ batt_volt_Min: num  13.1 13.1 13.1 13.1 13.1 ...                                                                             
 [9]  $ PTemp_Avg    : num  33.3 33.3 33.3 33.3 33.3 ...                                                                             
[10]  $ PM_25_Avg    : num  1.95 1.48 1.93 2.07 2.23 ...                                                                             
[11]  $ Flow_Avg     : num  2 2 2 2 2 ...                                                                                            
[12]  $ Temp_Avg     : num  20 19.9 20 19.9 19.6 ...                                                                                 
[13]  $ RH_Avg       : num  16.1 16 16 16 16 ...                                                                                     
[14]  $ BP_Avg       : num  841 841 841 841 841 ...                                                                                  
[15]  $ Program      : chr  "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...                                                  

$fru
  [1] Run: fru/lgr_ugga 2020-04-09 11:00:26                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
  [2]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
  [3]  *** caught segfault ***                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
  [4] address 0x2ae043e60000, cause 'memory not mapped'                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
  [5]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
  [6] Traceback:                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
  [7]  1: read_tokens_(data, tokenizer, col_specs, col_names, locale_,     n_max, progress)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
  [8]  2: read_tokens(ds, tokenizer, spec$cols, names(spec$cols), locale_ = locale,     n_max = n_max, progress = progress)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
  [9]  3: read_delimited(file, tokenizer, col_names = col_names, col_types = col_types,     locale = locale, skip = skip, skip_empty_rows = skip_empty_rows,     comment = comment, n_max = n_max, guess_max = guess_max,     progress = progress)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
 [10]  4: read_csv(file, col_names = col_names, col_types = col_types,     skip = 2, na = c("TO", "", "NA"), progress = F)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
 [11]  5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [12]  6: suppressWarnings({    read_csv(file, col_names = col_names, col_types = col_types,         skip = 2, na = c("TO", "", "NA"), progress = F)})                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
 [13]  7: doTryCatch(return(expr), name, parentenv, handler)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
 [14]  8: tryCatchOne(expr, names, parentenv, handlers[[1L]])                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
 [15]  9: tryCatchList(expr, classes, parentenv, handlers)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
 [16] 10: tryCatch(suppressWarnings({    read_csv(file, col_names = col_names, col_types = col_types,         skip = 2, na = c("TO", "", "NA"), progress = F)}), error = function(e) NULL)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
 [17] 11: FUN(X[[i]], ...)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
 [18] 12: lapply(files, function(file) {    col_names <- data_config[[instrument]]$raw$col_names    col_types <- data_config[[instrument]]$raw$col_types    ndelim <- str_count(system(paste("head -n 2", file, "| tail -n 1"),         intern = T), ",")    if (length(ndelim) == 0)         return()    if (ndelim == 23) {        col_names <- append(col_names, "fillvalue", after = 22)        col_types <- paste0(col_types, "c")    }    df <- tryCatch(suppressWarnings({        read_csv(file, col_names = col_names, col_types = col_types,             skip = 2, na = c("TO", "", "NA"), progress = F)    }), error = function(e) NULL)    if (is.null(df) || ncol(df) < 23 || ncol(df) > 24)         return(NULL)    if (ncol(df) == 24)         df[[23]] <- NULL    setNames(df, data_config[[instrument]]$raw$col_names)})                                                                                                                      
 [19] 13: eval(lhs, parent, parent)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
 [20] 14: eval(lhs, parent, parent)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
 [21] 15: lapply(files, function(file) {    col_names <- data_config[[instrument]]$raw$col_names    col_types <- data_config[[instrument]]$raw$col_types    ndelim <- str_count(system(paste("head -n 2", file, "| tail -n 1"),         intern = T), ",")    if (length(ndelim) == 0)         return()    if (ndelim == 23) {        col_names <- append(col_names, "fillvalue", after = 22)        col_types <- paste0(col_types, "c")    }    df <- tryCatch(suppressWarnings({        read_csv(file, col_names = col_names, col_types = col_types,             skip = 2, na = c("TO", "", "NA"), progress = F)    }), error = function(e) NULL)    if (is.null(df) || ncol(df) < 23 || ncol(df) > 24)         return(NULL)    if (ncol(df) == 24)         df[[23]] <- NULL    setNames(df, data_config[[instrument]]$raw$col_names)}) %>% bind_rows()                                                                                                      
 [22] 16: lgr_ugga_init()                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [23] 17: doTryCatch(return(expr), name, parentenv, handler)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
 [24] 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
 [25] 19: tryCatchList(expr, classes, parentenv, handlers)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
 [26] 20: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
 [27] 21: try({    instrument <- "lgr_ugga"    proc_init()    nd <- lgr_ugga_init()    nd <- lgr_ugga_qaqc()    update_archive(nd, data_path(site, instrument, "qaqc"))    nd <- lgr_ugga_calibrate()    update_archive(nd, data_path(site, instrument, "calibrated"))})                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
 [28] An irrecoverable exception occurred. R is aborting now ...                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
 [29] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [30] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [31] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [32] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [33] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [34] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [35] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [36] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [37] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [38] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [39] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [40] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [41] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [42] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [43] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [44] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [45] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [46] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [47] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [48] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [49] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [50] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [51] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [52] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [53] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [54] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [55] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [56] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [57] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [58] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [59] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [60] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [61] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [62] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [63] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [64] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [65] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [66] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [67] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [68] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [69] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [70] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [71] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [72] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [73] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [74] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [75] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [76] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [77] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [78] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [79] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [80] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [81] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [82] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [83] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [84] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [85] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [86] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [87] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [88] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [89] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [90] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [91] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [92] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [93] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [94] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [95] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [96] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [97] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [98] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
 [99] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
[100] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
[101] There were 15 warnings (use warnings() to see them)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     

$hdp
 [1] Run: hdp/lgr_ugga 2020-04-09 17:05:30                                                                                        
 [2] New data:                                                                                                                    
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 17514 obs. of  23 variables:                                                       
 [4]  $ Time_UTC    : POSIXct, format: "2020-04-07 17:33:59" "2020-04-07 17:34:08" ...                                            
 [5]  $ CH4_ppm     : num  15.5 15.4 15.2 15.2 14.8 ...                                                                           
 [6]  $ CH4_ppm_sd  : num  0.0132 0.0414 0.0614 0.0446 0.4172 ...                                                                 
 [7]  $ H2O_ppm     : num  1774 1792 1791 1759 1785 ...                                                                           
 [8]  $ H2O_ppm_sd  : num  38.4 31.5 40.4 43.8 57.5 ...                                                                           
 [9]  $ CO2_ppm     : num  418 418 418 418 418 ...                                                                                
[10]  $ CO2_ppm_sd  : num  0.356 0.316 0.459 0.338 0.298 ...                                                                      
[11]  $ CH4d_ppm    : num  15.5 15.4 15.2 15.2 14.8 ...                                                                           
[12]  $ CH4d_ppm_sd : num  0.0132 0.0416 0.0616 0.0442 0.4178 ...                                                                 
[13]  $ CO2d_ppm    : num  419 419 419 419 419 ...                                                                                
[14]  $ CO2d_ppm_sd : num  0.351 0.322 0.465 0.334 0.295 ...                                                                      
[15]  $ GasP_torr   : num  140 140 140 140 140 ...                                                                                
[16]  $ GasP_torr_sd: num  0.00792 0.00766 0.00896 0.00839 0.0089 ...                                                             
[17]  $ GasT_C      : num  29.9 29.9 29.9 29.9 29.9 ...                                                                           
[18]  $ GasT_C_sd   : num  0.001839 0.001215 0.001118 0.000899 0.001233 ...                                                       
[19]  $ AmbT_C      : num  32.2 32.2 32.2 32.2 32.2 ...                                                                           
[20]  $ AmbT_C_sd   : num  0.00168 0.00138 0.00201 0.00136 0.0014 ...                                                             
[21]  $ RD0_us      : num  10.2 10.2 10.2 10.2 10.2 ...                                                                           
[22]  $ RD0_us_sd   : num  0.00305 0.00336 0.00303 0.00277 0.0029 ...                                                             
[23]  $ RD1_us      : num  12.1 12.1 12.1 12.1 12.1 ...                                                                           
[24]  $ RD1_us_sd   : num  0.00601 0.00405 0.00471 0.00331 0.00352 ...                                                            
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                                                                
[26]  $ ID          : chr  "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Warning message:                                                                                                             
[28] package ‘bindrcpp’ was built under R version 3.5.2                                                                           

$heb
 [1] Run: heb/licor_6262 2020-04-09 17:05:38                                                                                          
 [2] Sending GET request to: http://166.130.69.244:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:01:05
 [3] New data:                                                                                                                        
 [4] 'data.frame': 30 obs. of  21 variables:                                                                                          
 [5]  $ TIMESTAMP              : POSIXct, format: "2020-04-09 17:01:10" "2020-04-09 17:01:20" ...                                     
 [6]  $ RECORD                 : int  2344811 2344812 2344813 2344814 2344815 2344816 2344817 2344818 2344819 2344820 ...             
 [7]  $ Year                   : int  2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...                                           
 [8]  $ jDay                   : int  100 100 100 100 100 100 100 100 100 100 ...                                                     
 [9]  $ HH                     : int  17 17 17 17 17 17 17 17 17 17 ...                                                               
[10]  $ MM                     : int  1 1 1 1 1 2 2 2 2 2 ...                                                                         
[11]  $ SS                     : int  10 20 30 40 50 0 10 20 30 40 ...                                                                
[12]  $ batt_volt_Min          : num  12.8 12.8 12.8 12.8 12.8 ...                                                                    
[13]  $ PTemp_Avg              : num  20.3 20.3 20.3 20.3 20.3 ...                                                                    
[14]  $ Room_T_Avg             : num  21.6 21.6 21.6 21.5 21.4 ...                                                                    
[15]  $ IRGA_T_Avg             : num  28.4 28.4 28.4 28.4 28.4 ...                                                                    
[16]  $ IRGA_P_Avg             : num  82.7 82.7 82.7 82.7 82.7 ...                                                                    
[17]  $ MF_Controller_mLmin_Avg: num  399 400 399 399 399 ...                                                                         
[18]  $ PressureVolt_Avg       : num  3709 3709 3710 3709 3709 ...                                                                    
[19]  $ RH_voltage_Avg         : num  1443 1452 1456 1439 1446 ...                                                                    
[20]  $ Gas_T_Avg              : num  23.1 23.1 23.1 23.1 23.1 ...                                                                    
[21]  $ rawCO2_Voltage_Avg     : num  417 417 418 418 416 ...                                                                         
[22]  $ rawCO2_Avg             : num  417 417 418 418 416 ...                                                                         
[23]  $ rawH2O_Avg             : num  5.99 5.97 5.99 5.71 6.05 ...                                                                    
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                     
[25]  $ Program                : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                         
[26] Warning message:                                                                                                                 
[27] package ‘bindrcpp’ was built under R version 3.5.2                                                                               

$hpl
 [1] Run: hpl/lgr_ugga 2020-04-09 17:05:48                                                
 [2] New data:                                                                            
 [3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 17389 obs. of  23 variables:               
 [4]  $ Time_UTC    : POSIXct, format: "2020-04-07 17:53:46" "2020-04-07 17:53:56" ...    
 [5]  $ CH4_ppm     : num  1.86 1.86 1.86 1.86 1.86 ...                                   
 [6]  $ CH4_ppm_sd  : num  0.002062 0.000537 0.000947 0.000539 0.000935 ...               
 [7]  $ H2O_ppm     : num  389 328 278 272 248 ...                                        
 [8]  $ H2O_ppm_sd  : num  35.2 42.3 11.6 17.1 23.8 ...                                   
 [9]  $ CO2_ppm     : num  396 396 396 396 396 ...                                        
[10]  $ CO2_ppm_sd  : num  0.355 0.195 0.174 0.131 0.154 ...                              
[11]  $ CH4d_ppm    : num  1.86 1.86 1.86 1.86 1.86 ...                                   
[12]  $ CH4d_ppm_sd : num  0.002035 0.000511 0.000941 0.000553 0.000934 ...               
[13]  $ CO2d_ppm    : num  396 396 396 396 396 ...                                        
[14]  $ CO2d_ppm_sd : num  0.351 0.192 0.174 0.13 0.154 ...                               
[15]  $ GasP_torr   : num  141 141 141 141 141 ...                                        
[16]  $ GasP_torr_sd: num  0.1979 0.0577 0.0655 0.0595 0.0584 ...                         
[17]  $ GasT_C      : num  34.9 34.9 34.8 34.8 34.8 ...                                   
[18]  $ GasT_C_sd   : num  0.00474 0.00384 0.00319 0.00389 0.00456 ...                    
[19]  $ AmbT_C      : num  37.4 37.4 37.4 37.4 37.4 ...                                   
[20]  $ AmbT_C_sd   : num  0.00875 0.00238 0.00272 0.00258 0.00374 ...                    
[21]  $ RD0_us      : num  10.3 10.3 10.3 10.3 10.3 ...                                   
[22]  $ RD0_us_sd   : num  0.00249 0.00236 0.00199 0.00205 0.0017 ...                     
[23]  $ RD1_us      : num  12.1 12.1 12.1 12.1 12.1 ...                                   
[24]  $ RD1_us_sd   : num  0.00323 0.00318 0.003 0.00117 0.00397 ...                      
[25]  $ Fit_Flag    : num  3 3 3 3 3 3 3 3 3 3 ...                                        
[26]  $ ID          : chr  "~flush~flush" "~flush~flush" "~flush~flush" "~flush~flush" ...
[27] Error in lgr_ugga_calibrate() :                                                      
[28]   Calibrations disabled. Sampling reference tank at: hpl                             
[29] In addition: Warning message:                                                        
[30] package ‘bindrcpp’ was built under R version 3.5.2                                   

$imc
 [1] Run: imc/licor_6262 2020-04-09 17:05:58                                                                                         
 [2] Sending GET request to: http://67.128.146.28:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:03:35
 [3] New data:                                                                                                                       
 [4] 'data.frame': 31 obs. of  21 variables:                                                                                         
 [5]  $ TIMESTAMP              : POSIXct, format: "2020-04-09 17:03:40" "2020-04-09 17:03:50" ...                                    
 [6]  $ RECORD                 : int  1171158 1171159 1171160 1171161 1171162 1171163 1171164 1171165 1171166 1171167 ...            
 [7]  $ Year                   : int  2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...                                          
 [8]  $ jDay                   : int  100 100 100 100 100 100 100 100 100 100 ...                                                    
 [9]  $ HH                     : int  17 17 17 17 17 17 17 17 17 17 ...                                                              
[10]  $ MM                     : int  3 3 4 4 4 4 4 4 5 5 ...                                                                        
[11]  $ SS                     : int  40 50 0 10 20 30 40 50 0 10 ...                                                                
[12]  $ batt_volt_Min          : num  12.7 12.7 12.7 12.7 12.7 ...                                                                   
[13]  $ PTemp_Avg              : num  27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 ...                                          
[14]  $ Room_T_Avg             : num  27.6 27.6 27.6 27.6 27.6 ...                                                                   
[15]  $ IRGA_T_Avg             : num  35.8 35.8 35.8 35.8 35.8 ...                                                                   
[16]  $ IRGA_P_Avg             : num  85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 ...                                          
[17]  $ MF_Controller_mLmin_Avg: num  400 400 400 400 399 ...                                                                        
[18]  $ PressureVolt_Avg       : num  3819 3819 3819 3819 3819 ...                                                                   
[19]  $ RH_voltage_Avg         : num  1381 1380 1378 1376 1377 ...                                                                   
[20]  $ Gas_T_Avg              : num  28.6 28.6 28.6 28.6 28.6 ...                                                                   
[21]  $ rawCO2_Voltage_Avg     : num  428 428 428 428 428 ...                                                                        
[22]  $ rawCO2_Avg             : num  427 427 427 427 427 ...                                                                        
[23]  $ rawH2O_Avg             : num  5.77 5.75 5.74 5.75 5.74 ...                                                                   
[24]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                    
[25]  $ Program                : chr  "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...                                        
[26] Warning message:                                                                                                                
[27] package ‘bindrcpp’ was built under R version 3.5.2                                                                              

$lg2
 [1] Run: lg2/licor_6262 2020-04-09 17:06:03                                                                                           
 [2] No bad data file found for: lg2/licor_6262                                                                                        
 [3] Sending GET request to: http://166.130.104.236:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:02:15
 [4] New data:                                                                                                                         
 [5] 'data.frame': 30 obs. of  21 variables:                                                                                           
 [6]  $ TIMESTAMP              : POSIXct, format: "2020-04-09 17:02:20" "2020-04-09 17:02:30" ...                                      
 [7]  $ RECORD                 : int  1853039 1853040 1853041 1853042 1853043 1853044 1853045 1853046 1853047 1853048 ...              
 [8]  $ Year                   : int  2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...                                            
 [9]  $ jDay                   : int  100 100 100 100 100 100 100 100 100 100 ...                                                      
[10]  $ HH                     : int  17 17 17 17 17 17 17 17 17 17 ...                                                                
[11]  $ MM                     : int  2 2 2 2 3 3 3 3 3 3 ...                                                                          
[12]  $ SS                     : int  20 30 40 50 0 10 20 30 40 50 ...                                                                 
[13]  $ batt_volt_Min          : num  12.5 12.6 12.5 12.6 12.5 ...                                                                     
[14]  $ PTemp_Avg              : num  29.7 29.7 29.7 29.7 29.7 ...                                                                     
[15]  $ Room_T_Avg             : num  29.5 29.6 29.6 29.5 29.5 ...                                                                     
[16]  $ IRGA_T_Avg             : num  39.9 39.9 39.9 39.9 39.9 ...                                                                     
[17]  $ IRGA_P_Avg             : num  98.7 98.7 98.7 98.7 98.7 ...                                                                     
[18]  $ MF_Controller_mLmin_Avg: num  400 400 400 400 400 ...                                                                          
[19]  $ PressureVolt_Avg       : num  3808 3808 3808 3808 3808 ...                                                                     
[20]  $ RH_voltage_Avg         : num  1340 1344 1348 1346 1342 ...                                                                     
[21]  $ Gas_T_Avg              : num  33.2 33.2 33.2 33.2 33.2 ...                                                                     
[22]  $ rawCO2_Voltage_Avg     : num  421 421 421 421 421 ...                                                                          
[23]  $ rawCO2_Avg             : num  421 421 421 421 421 ...                                                                          
[24]  $ rawH2O_Avg             : num  2.99 3.04 3.07 3.04 3 ...                                                                        
[25]  $ ID                     : int  -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...                                                      
[26]  $ Program                : chr  "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...                                          
[27] Error in cal$QAQC_Flag[cal$QAQC_Flag == 0] <- nd$QAQC_Flag[cal$QAQC_Flag ==  :                                                    
[28]   NAs are not allowed in subscripted assignments                                                                                  
[29] In addition: Warning message:                                                                                                     
[30] package ‘bindrcpp’ was built under R version 3.5.2                                                                                

$lgn
[1] Run: lgn/licor_6262 2020-04-09 17:06:11            
[2] Error in proc_init() : lgn data already up to date.

$msa
[1] Run: msa/licor_6262 2020-04-09 17:06:14            
[2] No bad data file found for: msa/licor_6262         
[3] Error in proc_init() : msa data already up to date.

$mur
[1] Run: mur/licor_6262 2020-04-09 17:06:17            
[2] No bad data file found for: mur/licor_6262         
[3] Error in proc_init() : mur data already up to date.

$roo
[1] Run: roo/lgr_ugga 2020-04-09 17:06:20              
[2] Error in proc_init() : roo data already up to date.

$rpk
[1] Run: rpk/licor_6262 2020-04-09 17:06:24                                                                                          
[2] Sending GET request to: http://205.127.188.48:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-03-19T10:43:25
[3] Error in read.table(text = response, sep = ",", skip = 4, stringsAsFactors = F) :                                                
[4]   no lines available in input                                                                                                    

$sug
 [1] Run: sug/metone_es642 2020-04-09 17:06:31                                                                                       
 [2] No bad data file found for: sug/metone_es642                                                                                    
 [3] Sending GET request to: http://166.130.89.167:80/?command=dataquery&uri=dl:PM&format=TOA5&mode=since-time&p1=2020-04-09T17:02:15
 [4] New data:                                                                                                                       
 [5] 'data.frame': 30 obs. of  10 variables:                                                                                         
 [6]  $ TIMESTAMP    : POSIXct, format: "2020-04-09 17:02:20" "2020-04-09 17:02:30" ...                                              
 [7]  $ RECORD       : int  8750504 8750505 8750506 8750507 8750508 8750509 8750510 8750511 8750512 8750513 ...                      
 [8]  $ batt_volt_Min: num  13.5 13.5 13.5 13.5 13.5 ...                                                                             
 [9]  $ PTemp_Avg    : num  21 21 21 21 21 ...                                                                                       
[10]  $ PM_25_Avg    : num  3.6 3.71 3.9 3.72 4.67 ...                                                                               
[11]  $ Flow_Avg     : num  1.61 1.61 1.61 1.61 1.61 ...                                                                             
[12]  $ Temp_Avg     : num  16.1 16.1 16.2 16.2 16.2 ...                                                                             
[13]  $ RH_Avg       : num  29.3 29.4 29.4 29.3 29.3 ...                                                                             
[14]  $ BP_Avg       : num  867 868 867 867 867 ...                                                                                  
[15]  $ Program      : chr  "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...                                                  

$sun
[1] Run: sun/licor_6262 2020-04-09 17:06:36            
[2] Error in proc_init() : sun data already up to date.

$trx01
[1] Run: trx01/2bo3 2020-04-09 17:06:51                      
[2] No bad data file found for: trx01/2bo3                   
[3] Error in try({ : 2b data up to date - nothing to be done.

$trx02
[1] Error in .libPaths(c("/uufs/chpc.utah.edu/common/home/u0791983/.Rpackages"),  : 
[2]   unused argument ("/uufs/chpc.utah.edu/sys/installdir/RLibs/3.5.2i")           
[3] Execution halted                                                                

$wbb
[1] Run: wbb/teom_1400ab 2020-04-09 17:07:24                                      
[2] No bad data file found for: wbb/teom_1400ab                                   
[3] Reprocessing data archive for: wbb/teom_1400ab                                
[4] rm: cannot remove ‘data/wbb/teom_1400ab/qaqc’: No such file or directory      
[5] rm: cannot remove ‘data/wbb/teom_1400ab/calibrated’: No such file or directory
[6] ssh: connect to host uataq-brain.atmos.utah.edu port 22: Connection timed out 
[7] rsync: connection unexpectedly closed (0 bytes received so far) [Receiver]    
[8] rsync error: unexplained error (code 255) at io.c(226) [Receiver=3.1.2]