| stid | last data | qaqc | co2 err | co2 ptp | ch4 err | ch4 ptp |
|---|---|---|---|---|---|---|
| dbk | Apr 09 11:06 MDT | 16 | 0.52 | - | - | |
| fru | Apr 09 04:55 MDT | 0.74 | 0.31 | 0.016 | 0.00061 | |
| hdp | Apr 09 11:05 MDT | 0.24 | 0.18 | 0.0083 | 0.38 | |
| heb | Apr 09 11:06 MDT | 0.14 | 0.75 | - | - | |
| hpl | Apr 09 11:05 MDT | 0.26 | 0.091 | 0.0085 | 0.0095 | |
| imc | Apr 09 11:08 MDT | -4 | 20 | 1 | - | - |
| lg2 | Apr 09 11:07 MDT | -3 | - | 0.93 | - | - |
| sug | Apr 09 11:07 MDT | -3 | - | 0.74 | - | - |
| wbb | Apr 09 11:06 MDT | 0.79 | 0.29 | 0.0083 | 0.0087 |
$asb
[1] Run: asb/licor_6262 2020-04-09 17:05:05
[2] No bad data file found for: asb/licor_6262
[3] Error in proc_init() : asb data already up to date.
$csp
[1] Run: csp/lgr_ugga 2020-04-09 17:05:08
[2] New data:
[3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 11585 obs. of 23 variables:
[4] $ Time_UTC : POSIXct, format: "2020-03-27 17:56:17" "2020-03-27 17:56:26" ...
[5] $ CH4_ppm : num 2.1 2.1 2.1 2.1 2.1 ...
[6] $ CH4_ppm_sd : num 0.001528 0.001073 0.000804 0.001626 0.002293 ...
[7] $ H2O_ppm : num 6340 6315 6279 6329 6353 ...
[8] $ H2O_ppm_sd : num 29.7 36.2 72.7 47 24.7 ...
[9] $ CO2_ppm : num 417 417 417 417 417 ...
[10] $ CO2_ppm_sd : num 0.132 0.196 0.176 0.254 0.195 ...
[11] $ CH4d_ppm : num 2.12 2.12 2.12 2.11 2.11 ...
[12] $ CH4d_ppm_sd : num 0.001537 0.001084 0.000845 0.001559 0.00232 ...
[13] $ CO2d_ppm : num 419 419 419 419 419 ...
[14] $ CO2d_ppm_sd : num 0.134 0.193 0.185 0.267 0.193 ...
[15] $ GasP_torr : num 140 140 140 140 140 ...
[16] $ GasP_torr_sd: num 0.0313 0.0291 0.0298 0.0307 0.0298 ...
[17] $ GasT_C : num 20.4 20.4 20.4 20.4 20.4 ...
[18] $ GasT_C_sd : num 0.00272 0.00247 0.00228 0.00221 0.00237 ...
[19] $ AmbT_C : num 23.3 23.4 23.4 23.4 23.4 ...
[20] $ AmbT_C_sd : num 0.00683 0.00954 0.00785 0.00621 0.00488 ...
[21] $ RD0_us : num 11 11 11 11 11 ...
[22] $ RD0_us_sd : num 0.00167 0.0015 0.00202 0.00189 0.00244 ...
[23] $ RD1_us : num 11.8 11.8 11.8 11.8 11.8 ...
[24] $ RD1_us_sd : num 0.00283 0.00356 0.00161 0.00417 0.00275 ...
[25] $ Fit_Flag : num 3 3 3 3 3 3 3 3 3 3 ...
[26] $ ID : chr "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Warning message:
[28] package ‘bindrcpp’ was built under R version 3.5.2
$dbk
[1] Run: dbk/metone_es642 2020-04-09 17:05:22
[2] No bad data file found for: dbk/metone_es642
[3] Sending GET request to: http://166.130.22.212:80/?command=dataquery&uri=dl:PM&format=TOA5&mode=since-time&p1=2020-04-09T17:01:05
[4] New data:
[5] 'data.frame': 31 obs. of 10 variables:
[6] $ TIMESTAMP : POSIXct, format: "2020-04-09 17:01:10" "2020-04-09 17:01:20" ...
[7] $ RECORD : int 1454757 1454758 1454759 1454760 1454761 1454762 1454763 1454764 1454765 1454766 ...
[8] $ batt_volt_Min: num 13.1 13.1 13.1 13.1 13.1 ...
[9] $ PTemp_Avg : num 33.3 33.3 33.3 33.3 33.3 ...
[10] $ PM_25_Avg : num 1.95 1.48 1.93 2.07 2.23 ...
[11] $ Flow_Avg : num 2 2 2 2 2 ...
[12] $ Temp_Avg : num 20 19.9 20 19.9 19.6 ...
[13] $ RH_Avg : num 16.1 16 16 16 16 ...
[14] $ BP_Avg : num 841 841 841 841 841 ...
[15] $ Program : chr "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...
$fru
[1] Run: fru/lgr_ugga 2020-04-09 11:00:26
[2]
[3] *** caught segfault ***
[4] address 0x2ae043e60000, cause 'memory not mapped'
[5]
[6] Traceback:
[7] 1: read_tokens_(data, tokenizer, col_specs, col_names, locale_, n_max, progress)
[8] 2: read_tokens(ds, tokenizer, spec$cols, names(spec$cols), locale_ = locale, n_max = n_max, progress = progress)
[9] 3: read_delimited(file, tokenizer, col_names = col_names, col_types = col_types, locale = locale, skip = skip, skip_empty_rows = skip_empty_rows, comment = comment, n_max = n_max, guess_max = guess_max, progress = progress)
[10] 4: read_csv(file, col_names = col_names, col_types = col_types, skip = 2, na = c("TO", "", "NA"), progress = F)
[11] 5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
[12] 6: suppressWarnings({ read_csv(file, col_names = col_names, col_types = col_types, skip = 2, na = c("TO", "", "NA"), progress = F)})
[13] 7: doTryCatch(return(expr), name, parentenv, handler)
[14] 8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
[15] 9: tryCatchList(expr, classes, parentenv, handlers)
[16] 10: tryCatch(suppressWarnings({ read_csv(file, col_names = col_names, col_types = col_types, skip = 2, na = c("TO", "", "NA"), progress = F)}), error = function(e) NULL)
[17] 11: FUN(X[[i]], ...)
[18] 12: lapply(files, function(file) { col_names <- data_config[[instrument]]$raw$col_names col_types <- data_config[[instrument]]$raw$col_types ndelim <- str_count(system(paste("head -n 2", file, "| tail -n 1"), intern = T), ",") if (length(ndelim) == 0) return() if (ndelim == 23) { col_names <- append(col_names, "fillvalue", after = 22) col_types <- paste0(col_types, "c") } df <- tryCatch(suppressWarnings({ read_csv(file, col_names = col_names, col_types = col_types, skip = 2, na = c("TO", "", "NA"), progress = F) }), error = function(e) NULL) if (is.null(df) || ncol(df) < 23 || ncol(df) > 24) return(NULL) if (ncol(df) == 24) df[[23]] <- NULL setNames(df, data_config[[instrument]]$raw$col_names)})
[19] 13: eval(lhs, parent, parent)
[20] 14: eval(lhs, parent, parent)
[21] 15: lapply(files, function(file) { col_names <- data_config[[instrument]]$raw$col_names col_types <- data_config[[instrument]]$raw$col_types ndelim <- str_count(system(paste("head -n 2", file, "| tail -n 1"), intern = T), ",") if (length(ndelim) == 0) return() if (ndelim == 23) { col_names <- append(col_names, "fillvalue", after = 22) col_types <- paste0(col_types, "c") } df <- tryCatch(suppressWarnings({ read_csv(file, col_names = col_names, col_types = col_types, skip = 2, na = c("TO", "", "NA"), progress = F) }), error = function(e) NULL) if (is.null(df) || ncol(df) < 23 || ncol(df) > 24) return(NULL) if (ncol(df) == 24) df[[23]] <- NULL setNames(df, data_config[[instrument]]$raw$col_names)}) %>% bind_rows()
[22] 16: lgr_ugga_init()
[23] 17: doTryCatch(return(expr), name, parentenv, handler)
[24] 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
[25] 19: tryCatchList(expr, classes, parentenv, handlers)
[26] 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
[27] 21: try({ instrument <- "lgr_ugga" proc_init() nd <- lgr_ugga_init() nd <- lgr_ugga_qaqc() update_archive(nd, data_path(site, instrument, "qaqc")) nd <- lgr_ugga_calibrate() update_archive(nd, data_path(site, instrument, "calibrated"))})
[28] An irrecoverable exception occurred. R is aborting now ...
[29] There were 15 warnings (use warnings() to see them)
[30] There were 15 warnings (use warnings() to see them)
[31] There were 15 warnings (use warnings() to see them)
[32] There were 15 warnings (use warnings() to see them)
[33] There were 15 warnings (use warnings() to see them)
[34] There were 15 warnings (use warnings() to see them)
[35] There were 15 warnings (use warnings() to see them)
[36] There were 15 warnings (use warnings() to see them)
[37] There were 15 warnings (use warnings() to see them)
[38] There were 15 warnings (use warnings() to see them)
[39] There were 15 warnings (use warnings() to see them)
[40] There were 15 warnings (use warnings() to see them)
[41] There were 15 warnings (use warnings() to see them)
[42] There were 15 warnings (use warnings() to see them)
[43] There were 15 warnings (use warnings() to see them)
[44] There were 15 warnings (use warnings() to see them)
[45] There were 15 warnings (use warnings() to see them)
[46] There were 15 warnings (use warnings() to see them)
[47] There were 15 warnings (use warnings() to see them)
[48] There were 15 warnings (use warnings() to see them)
[49] There were 15 warnings (use warnings() to see them)
[50] There were 15 warnings (use warnings() to see them)
[51] There were 15 warnings (use warnings() to see them)
[52] There were 15 warnings (use warnings() to see them)
[53] There were 15 warnings (use warnings() to see them)
[54] There were 15 warnings (use warnings() to see them)
[55] There were 15 warnings (use warnings() to see them)
[56] There were 15 warnings (use warnings() to see them)
[57] There were 15 warnings (use warnings() to see them)
[58] There were 15 warnings (use warnings() to see them)
[59] There were 15 warnings (use warnings() to see them)
[60] There were 15 warnings (use warnings() to see them)
[61] There were 15 warnings (use warnings() to see them)
[62] There were 15 warnings (use warnings() to see them)
[63] There were 15 warnings (use warnings() to see them)
[64] There were 15 warnings (use warnings() to see them)
[65] There were 15 warnings (use warnings() to see them)
[66] There were 15 warnings (use warnings() to see them)
[67] There were 15 warnings (use warnings() to see them)
[68] There were 15 warnings (use warnings() to see them)
[69] There were 15 warnings (use warnings() to see them)
[70] There were 15 warnings (use warnings() to see them)
[71] There were 15 warnings (use warnings() to see them)
[72] There were 15 warnings (use warnings() to see them)
[73] There were 15 warnings (use warnings() to see them)
[74] There were 15 warnings (use warnings() to see them)
[75] There were 15 warnings (use warnings() to see them)
[76] There were 15 warnings (use warnings() to see them)
[77] There were 15 warnings (use warnings() to see them)
[78] There were 15 warnings (use warnings() to see them)
[79] There were 15 warnings (use warnings() to see them)
[80] There were 15 warnings (use warnings() to see them)
[81] There were 15 warnings (use warnings() to see them)
[82] There were 15 warnings (use warnings() to see them)
[83] There were 15 warnings (use warnings() to see them)
[84] There were 15 warnings (use warnings() to see them)
[85] There were 15 warnings (use warnings() to see them)
[86] There were 15 warnings (use warnings() to see them)
[87] There were 15 warnings (use warnings() to see them)
[88] There were 15 warnings (use warnings() to see them)
[89] There were 15 warnings (use warnings() to see them)
[90] There were 15 warnings (use warnings() to see them)
[91] There were 15 warnings (use warnings() to see them)
[92] There were 15 warnings (use warnings() to see them)
[93] There were 15 warnings (use warnings() to see them)
[94] There were 15 warnings (use warnings() to see them)
[95] There were 15 warnings (use warnings() to see them)
[96] There were 15 warnings (use warnings() to see them)
[97] There were 15 warnings (use warnings() to see them)
[98] There were 15 warnings (use warnings() to see them)
[99] There were 15 warnings (use warnings() to see them)
[100] There were 15 warnings (use warnings() to see them)
[101] There were 15 warnings (use warnings() to see them)
$hdp
[1] Run: hdp/lgr_ugga 2020-04-09 17:05:30
[2] New data:
[3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 17514 obs. of 23 variables:
[4] $ Time_UTC : POSIXct, format: "2020-04-07 17:33:59" "2020-04-07 17:34:08" ...
[5] $ CH4_ppm : num 15.5 15.4 15.2 15.2 14.8 ...
[6] $ CH4_ppm_sd : num 0.0132 0.0414 0.0614 0.0446 0.4172 ...
[7] $ H2O_ppm : num 1774 1792 1791 1759 1785 ...
[8] $ H2O_ppm_sd : num 38.4 31.5 40.4 43.8 57.5 ...
[9] $ CO2_ppm : num 418 418 418 418 418 ...
[10] $ CO2_ppm_sd : num 0.356 0.316 0.459 0.338 0.298 ...
[11] $ CH4d_ppm : num 15.5 15.4 15.2 15.2 14.8 ...
[12] $ CH4d_ppm_sd : num 0.0132 0.0416 0.0616 0.0442 0.4178 ...
[13] $ CO2d_ppm : num 419 419 419 419 419 ...
[14] $ CO2d_ppm_sd : num 0.351 0.322 0.465 0.334 0.295 ...
[15] $ GasP_torr : num 140 140 140 140 140 ...
[16] $ GasP_torr_sd: num 0.00792 0.00766 0.00896 0.00839 0.0089 ...
[17] $ GasT_C : num 29.9 29.9 29.9 29.9 29.9 ...
[18] $ GasT_C_sd : num 0.001839 0.001215 0.001118 0.000899 0.001233 ...
[19] $ AmbT_C : num 32.2 32.2 32.2 32.2 32.2 ...
[20] $ AmbT_C_sd : num 0.00168 0.00138 0.00201 0.00136 0.0014 ...
[21] $ RD0_us : num 10.2 10.2 10.2 10.2 10.2 ...
[22] $ RD0_us_sd : num 0.00305 0.00336 0.00303 0.00277 0.0029 ...
[23] $ RD1_us : num 12.1 12.1 12.1 12.1 12.1 ...
[24] $ RD1_us_sd : num 0.00601 0.00405 0.00471 0.00331 0.00352 ...
[25] $ Fit_Flag : num 3 3 3 3 3 3 3 3 3 3 ...
[26] $ ID : chr "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" "~Atmosphere~Atmosphere" ...
[27] Warning message:
[28] package ‘bindrcpp’ was built under R version 3.5.2
$heb
[1] Run: heb/licor_6262 2020-04-09 17:05:38
[2] Sending GET request to: http://166.130.69.244:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:01:05
[3] New data:
[4] 'data.frame': 30 obs. of 21 variables:
[5] $ TIMESTAMP : POSIXct, format: "2020-04-09 17:01:10" "2020-04-09 17:01:20" ...
[6] $ RECORD : int 2344811 2344812 2344813 2344814 2344815 2344816 2344817 2344818 2344819 2344820 ...
[7] $ Year : int 2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...
[8] $ jDay : int 100 100 100 100 100 100 100 100 100 100 ...
[9] $ HH : int 17 17 17 17 17 17 17 17 17 17 ...
[10] $ MM : int 1 1 1 1 1 2 2 2 2 2 ...
[11] $ SS : int 10 20 30 40 50 0 10 20 30 40 ...
[12] $ batt_volt_Min : num 12.8 12.8 12.8 12.8 12.8 ...
[13] $ PTemp_Avg : num 20.3 20.3 20.3 20.3 20.3 ...
[14] $ Room_T_Avg : num 21.6 21.6 21.6 21.5 21.4 ...
[15] $ IRGA_T_Avg : num 28.4 28.4 28.4 28.4 28.4 ...
[16] $ IRGA_P_Avg : num 82.7 82.7 82.7 82.7 82.7 ...
[17] $ MF_Controller_mLmin_Avg: num 399 400 399 399 399 ...
[18] $ PressureVolt_Avg : num 3709 3709 3710 3709 3709 ...
[19] $ RH_voltage_Avg : num 1443 1452 1456 1439 1446 ...
[20] $ Gas_T_Avg : num 23.1 23.1 23.1 23.1 23.1 ...
[21] $ rawCO2_Voltage_Avg : num 417 417 418 418 416 ...
[22] $ rawCO2_Avg : num 417 417 418 418 416 ...
[23] $ rawH2O_Avg : num 5.99 5.97 5.99 5.71 6.05 ...
[24] $ ID : int -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...
[25] $ Program : chr "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...
[26] Warning message:
[27] package ‘bindrcpp’ was built under R version 3.5.2
$hpl
[1] Run: hpl/lgr_ugga 2020-04-09 17:05:48
[2] New data:
[3] Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 17389 obs. of 23 variables:
[4] $ Time_UTC : POSIXct, format: "2020-04-07 17:53:46" "2020-04-07 17:53:56" ...
[5] $ CH4_ppm : num 1.86 1.86 1.86 1.86 1.86 ...
[6] $ CH4_ppm_sd : num 0.002062 0.000537 0.000947 0.000539 0.000935 ...
[7] $ H2O_ppm : num 389 328 278 272 248 ...
[8] $ H2O_ppm_sd : num 35.2 42.3 11.6 17.1 23.8 ...
[9] $ CO2_ppm : num 396 396 396 396 396 ...
[10] $ CO2_ppm_sd : num 0.355 0.195 0.174 0.131 0.154 ...
[11] $ CH4d_ppm : num 1.86 1.86 1.86 1.86 1.86 ...
[12] $ CH4d_ppm_sd : num 0.002035 0.000511 0.000941 0.000553 0.000934 ...
[13] $ CO2d_ppm : num 396 396 396 396 396 ...
[14] $ CO2d_ppm_sd : num 0.351 0.192 0.174 0.13 0.154 ...
[15] $ GasP_torr : num 141 141 141 141 141 ...
[16] $ GasP_torr_sd: num 0.1979 0.0577 0.0655 0.0595 0.0584 ...
[17] $ GasT_C : num 34.9 34.9 34.8 34.8 34.8 ...
[18] $ GasT_C_sd : num 0.00474 0.00384 0.00319 0.00389 0.00456 ...
[19] $ AmbT_C : num 37.4 37.4 37.4 37.4 37.4 ...
[20] $ AmbT_C_sd : num 0.00875 0.00238 0.00272 0.00258 0.00374 ...
[21] $ RD0_us : num 10.3 10.3 10.3 10.3 10.3 ...
[22] $ RD0_us_sd : num 0.00249 0.00236 0.00199 0.00205 0.0017 ...
[23] $ RD1_us : num 12.1 12.1 12.1 12.1 12.1 ...
[24] $ RD1_us_sd : num 0.00323 0.00318 0.003 0.00117 0.00397 ...
[25] $ Fit_Flag : num 3 3 3 3 3 3 3 3 3 3 ...
[26] $ ID : chr "~flush~flush" "~flush~flush" "~flush~flush" "~flush~flush" ...
[27] Error in lgr_ugga_calibrate() :
[28] Calibrations disabled. Sampling reference tank at: hpl
[29] In addition: Warning message:
[30] package ‘bindrcpp’ was built under R version 3.5.2
$imc
[1] Run: imc/licor_6262 2020-04-09 17:05:58
[2] Sending GET request to: http://67.128.146.28:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:03:35
[3] New data:
[4] 'data.frame': 31 obs. of 21 variables:
[5] $ TIMESTAMP : POSIXct, format: "2020-04-09 17:03:40" "2020-04-09 17:03:50" ...
[6] $ RECORD : int 1171158 1171159 1171160 1171161 1171162 1171163 1171164 1171165 1171166 1171167 ...
[7] $ Year : int 2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...
[8] $ jDay : int 100 100 100 100 100 100 100 100 100 100 ...
[9] $ HH : int 17 17 17 17 17 17 17 17 17 17 ...
[10] $ MM : int 3 3 4 4 4 4 4 4 5 5 ...
[11] $ SS : int 40 50 0 10 20 30 40 50 0 10 ...
[12] $ batt_volt_Min : num 12.7 12.7 12.7 12.7 12.7 ...
[13] $ PTemp_Avg : num 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 ...
[14] $ Room_T_Avg : num 27.6 27.6 27.6 27.6 27.6 ...
[15] $ IRGA_T_Avg : num 35.8 35.8 35.8 35.8 35.8 ...
[16] $ IRGA_P_Avg : num 85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 85.2 ...
[17] $ MF_Controller_mLmin_Avg: num 400 400 400 400 399 ...
[18] $ PressureVolt_Avg : num 3819 3819 3819 3819 3819 ...
[19] $ RH_voltage_Avg : num 1381 1380 1378 1376 1377 ...
[20] $ Gas_T_Avg : num 28.6 28.6 28.6 28.6 28.6 ...
[21] $ rawCO2_Voltage_Avg : num 428 428 428 428 428 ...
[22] $ rawCO2_Avg : num 427 427 427 427 427 ...
[23] $ rawH2O_Avg : num 5.77 5.75 5.74 5.75 5.74 ...
[24] $ ID : int -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...
[25] $ Program : chr "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...
[26] Warning message:
[27] package ‘bindrcpp’ was built under R version 3.5.2
$lg2
[1] Run: lg2/licor_6262 2020-04-09 17:06:03
[2] No bad data file found for: lg2/licor_6262
[3] Sending GET request to: http://166.130.104.236:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-04-09T17:02:15
[4] New data:
[5] 'data.frame': 30 obs. of 21 variables:
[6] $ TIMESTAMP : POSIXct, format: "2020-04-09 17:02:20" "2020-04-09 17:02:30" ...
[7] $ RECORD : int 1853039 1853040 1853041 1853042 1853043 1853044 1853045 1853046 1853047 1853048 ...
[8] $ Year : int 2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...
[9] $ jDay : int 100 100 100 100 100 100 100 100 100 100 ...
[10] $ HH : int 17 17 17 17 17 17 17 17 17 17 ...
[11] $ MM : int 2 2 2 2 3 3 3 3 3 3 ...
[12] $ SS : int 20 30 40 50 0 10 20 30 40 50 ...
[13] $ batt_volt_Min : num 12.5 12.6 12.5 12.6 12.5 ...
[14] $ PTemp_Avg : num 29.7 29.7 29.7 29.7 29.7 ...
[15] $ Room_T_Avg : num 29.5 29.6 29.6 29.5 29.5 ...
[16] $ IRGA_T_Avg : num 39.9 39.9 39.9 39.9 39.9 ...
[17] $ IRGA_P_Avg : num 98.7 98.7 98.7 98.7 98.7 ...
[18] $ MF_Controller_mLmin_Avg: num 400 400 400 400 400 ...
[19] $ PressureVolt_Avg : num 3808 3808 3808 3808 3808 ...
[20] $ RH_voltage_Avg : num 1340 1344 1348 1346 1342 ...
[21] $ Gas_T_Avg : num 33.2 33.2 33.2 33.2 33.2 ...
[22] $ rawCO2_Voltage_Avg : num 421 421 421 421 421 ...
[23] $ rawCO2_Avg : num 421 421 421 421 421 ...
[24] $ rawH2O_Avg : num 2.99 3.04 3.07 3.04 3 ...
[25] $ ID : int -10 -10 -10 -10 -10 -10 -10 -10 -10 -10 ...
[26] $ Program : chr "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" "SLCCO2_V23" ...
[27] Error in cal$QAQC_Flag[cal$QAQC_Flag == 0] <- nd$QAQC_Flag[cal$QAQC_Flag == :
[28] NAs are not allowed in subscripted assignments
[29] In addition: Warning message:
[30] package ‘bindrcpp’ was built under R version 3.5.2
$lgn
[1] Run: lgn/licor_6262 2020-04-09 17:06:11
[2] Error in proc_init() : lgn data already up to date.
$msa
[1] Run: msa/licor_6262 2020-04-09 17:06:14
[2] No bad data file found for: msa/licor_6262
[3] Error in proc_init() : msa data already up to date.
$mur
[1] Run: mur/licor_6262 2020-04-09 17:06:17
[2] No bad data file found for: mur/licor_6262
[3] Error in proc_init() : mur data already up to date.
$roo
[1] Run: roo/lgr_ugga 2020-04-09 17:06:20
[2] Error in proc_init() : roo data already up to date.
$rpk
[1] Run: rpk/licor_6262 2020-04-09 17:06:24
[2] Sending GET request to: http://205.127.188.48:80/?command=dataquery&uri=dl:Dat&format=TOA5&mode=since-time&p1=2020-03-19T10:43:25
[3] Error in read.table(text = response, sep = ",", skip = 4, stringsAsFactors = F) :
[4] no lines available in input
$sug
[1] Run: sug/metone_es642 2020-04-09 17:06:31
[2] No bad data file found for: sug/metone_es642
[3] Sending GET request to: http://166.130.89.167:80/?command=dataquery&uri=dl:PM&format=TOA5&mode=since-time&p1=2020-04-09T17:02:15
[4] New data:
[5] 'data.frame': 30 obs. of 10 variables:
[6] $ TIMESTAMP : POSIXct, format: "2020-04-09 17:02:20" "2020-04-09 17:02:30" ...
[7] $ RECORD : int 8750504 8750505 8750506 8750507 8750508 8750509 8750510 8750511 8750512 8750513 ...
[8] $ batt_volt_Min: num 13.5 13.5 13.5 13.5 13.5 ...
[9] $ PTemp_Avg : num 21 21 21 21 21 ...
[10] $ PM_25_Avg : num 3.6 3.71 3.9 3.72 4.67 ...
[11] $ Flow_Avg : num 1.61 1.61 1.61 1.61 1.61 ...
[12] $ Temp_Avg : num 16.1 16.1 16.2 16.2 16.2 ...
[13] $ RH_Avg : num 29.3 29.4 29.4 29.3 29.3 ...
[14] $ BP_Avg : num 867 868 867 867 867 ...
[15] $ Program : chr "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" "SLCCO2_V21" ...
$sun
[1] Run: sun/licor_6262 2020-04-09 17:06:36
[2] Error in proc_init() : sun data already up to date.
$trx01
[1] Run: trx01/2bo3 2020-04-09 17:06:51
[2] No bad data file found for: trx01/2bo3
[3] Error in try({ : 2b data up to date - nothing to be done.
$trx02
[1] Error in .libPaths(c("/uufs/chpc.utah.edu/common/home/u0791983/.Rpackages"), :
[2] unused argument ("/uufs/chpc.utah.edu/sys/installdir/RLibs/3.5.2i")
[3] Execution halted
$wbb
[1] Run: wbb/teom_1400ab 2020-04-09 17:07:24
[2] No bad data file found for: wbb/teom_1400ab
[3] Reprocessing data archive for: wbb/teom_1400ab
[4] rm: cannot remove ‘data/wbb/teom_1400ab/qaqc’: No such file or directory
[5] rm: cannot remove ‘data/wbb/teom_1400ab/calibrated’: No such file or directory
[6] ssh: connect to host uataq-brain.atmos.utah.edu port 22: Connection timed out
[7] rsync: connection unexpectedly closed (0 bytes received so far) [Receiver]
[8] rsync error: unexplained error (code 255) at io.c(226) [Receiver=3.1.2]